Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs56265640 | chr8:8121882 | G/A | 0.000221 | 488 | 15.28 | 18.43 | 12.23 | KM Plot |
| THCA | rs56271768 | chr10:81837051 | T/G | 0.000262 | 488 | 16.22 | 15.9 | 11.73 | KM Plot |
| THCA | rs56272198 | chr10:81617626 | TA/T | 0 | 474 | 15.97 | 15.9 | 5.92 | KM Plot |
| THCA | rs56276627 | chr20:61488097 | T/G | 5.03E-5 | 480 | 15.13 | 17 | 14.55 | KM Plot |
| THCA | rs56281986 | chr3:52190937 | A/T | 8.21E-5 | 483 | 16.07 | 14.8 | 17.72 | KM Plot |
| THCA | rs56284098 | chr14:36078442 | A/G | 5.57E-6 | 484 | 15.93 | 16.35 | 8.33 | KM Plot |
| THCA | rs56285151 | chr4:88175325 | C/T | 1.62E-6 | 486 | 15.97 | 16.32 | 9.73 | KM Plot |
| THCA | rs56293236 | chr16:2928565 | G/A | 0.000152 | 484 | 15.2 | 17.23 | 15.4 | KM Plot |
| THCA | rs56302966 | chr1:156898227 | T/C | 9.68E-7 | 469 | 16.63 | 14.8 | 11.3 | KM Plot |
| THCA | rs56304036 | chr10:7869286 | A/AT | 5.68E-6 | 488 | 16.07 | 15.9 | 15.5 | KM Plot |
| THCA | rs56305638 | chr4:88177210 | AT/A | 1.7E-6 | 486 | 16.02 | 16.23 | 9.73 | KM Plot |
| THCA | rs56317427 | chr10:81861934 | T/C | 0.000145 | 487 | 15.97 | 15.98 | 9.77 | KM Plot |
| THCA | rs56321991 | chr4:88168963 | C/T | 1.62E-6 | 487 | 16.37 | 14.93 | 11.33 | KM Plot |
| THCA | rs56327113 | chr4:88167254 | C/T | 1.62E-6 | 487 | 16.37 | 14.93 | 11.33 | KM Plot |
| THCA | rs563344 | chr11:66420361 | G/A | 0.000219 | 488 | 16.3 | 14.38 | 14.9 | KM Plot |